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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs7369893 chr2:101145925 A/G LOC285359 chr3:101431278-101432259:+ 0.35 7.85 2.73E-14 Box Plot
THCA rs7371951 chr3:90208583 A/T STX19 chr3:93733213-93747454:- 0.5 6.89 1.8E-11 Box Plot
THCA rs73780666 chr6:151731973 C/T NEK5 chr13:52607747-52703214:- 0.61 7.06 5.86E-12 Box Plot
THCA rs73780679 chr6:151732900 A/G NEK5 chr13:52607747-52703214:- 0.61 7.05 6.42E-12 Box Plot
THCA rs73780685 chr6:151738566 A/G NEK5 chr13:52607747-52703214:- 0.6 6.91 1.54E-11 Box Plot
THCA rs73780690 chr6:151752855 C/A NEK5 chr13:52607747-52703214:- 0.6 6.9 1.67E-11 Box Plot
THCA rs73783013 chr6:151758401 A/G NEK5 chr13:52607747-52703214:- 0.63 7.5 3.07E-13 Box Plot
THCA rs73783018 chr6:151762344 A/G NEK5 chr13:52607747-52703214:- 0.44 6.28 7.49E-10 Box Plot
THCA rs73783030 chr6:151779193 G/T NEK5 chr13:52607747-52703214:- 0.58 6.91 1.59E-11 Box Plot
THCA rs7378983 chr5:49787723 C/A LOC647121 chr1:121260910-121313686:+ -0.37 -7.92 1.67E-14 Box Plot
THCA rs7380505 chr5:49825457 A/G LOC647121 chr1:121260910-121313686:+ -0.36 -7.57 1.88E-13 Box Plot
THCA rs7380816 chr5:49767893 C/T LOC647121 chr1:121260910-121313686:+ -0.37 -7.92 1.67E-14 Box Plot
THCA rs73857778 chr4:150751118 A/G B4GALT4 chr3:118930579-118959950:- -0.67 -6.03 3.22E-9 Box Plot
THCA rs73960420 chr2:132200136 C/A CCDC74B chr2:130896860-130902707:- 0.37 6.66 7.44E-11 Box Plot
THCA rs73994605 chr2:228280325 A/G RAC2 chr22:37621301-37640488:- 0.25 6.06 2.71E-9 Box Plot